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Statistics of MetaPhOrs

In total, over 7 million phylogenetic trees from 12 databases for 18,481,015 genes from 2,714 species have been processed in order to compute comprehensive set of 6,883,833,661 orthologs and paralogs.

Repositories

Below, you can find detailed information about repositories used in metaPhOrs (release 201405). Please refer to Methodology section, to get more information how the data have been processed.
*different proteome versions of the same genome counted; 1,124 unique genomes

dbiddatabaseversionproteinsproteomestrees
1ensembl vertebrates751,528,6346621,124
2ensembl bacteria16934,73524837,806
3ensembl fungi22461,9504525,851
4ensembl metazoa221,010,0075258,822
5ensembl pan221,566,81017685,300
6ensembl plants221,717,5653851,270
7ensembl protists22414,39029111,473
8phylomedb20140516,421,3851,766*3,697,286
9orthomcl51,393,14415077,113
10eggnog414,875,5303,6861,325,900
11hogenom67,251,4801,464185,800
12treefam82,326,69210915,322
 SUM 49,902,3227,8295,693,067

Species

There are 2,714 species present in metaPhOrs. Retrieve statistics of:

Tree of life

Orthologs deposited in metaPhOrs were mapped onto the Tree of Life. The bar charts show the proportion of proteins from each proteome that is represented in the database. Green bars illustrate fraction of proteome with orthologs and/or paralogs indentified. While grey bars represent the fraction of preoteome without any homologs. Species that were used as a seed to reconstructe the phylome (like human, yeast, E.coli) and their close relatives are characterized by high coverage (respectively longer green bars). Similarily, the model organisms, that are well-represented in external trees repositories.

 

UNDER CONSTRUCTION